Generate visual library prep pcr quality control report
pcr_lib_qc_report.Rd
Generate visual library prep pcr quality control report
Arguments
- pcr_lib_qc
output from
pcr_lib_qc
- report_path
the name of the report as well as where it should be output. If NULL, it will export to a temp directory
Examples
system.file("extdata", "untidy-standard-curve.xlsx", package = "amplify") |>
pcr_tidy() |>
pcr_lib_calc() |>
pcr_lib_qc() |>
pcr_lib_qc_report()
#> Warning: cannot create dir '', reason 'No such file or directory'
#> Warning: path[1]="": The filename, directory name, or volume label syntax is incorrect
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#> processing file: pcr-lib-qc.Rmd
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#> inline R code fragments
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#> label: unnamed-chunk-1 (with options)
#> List of 2
#> $ echo : logi FALSE
#> $ message: logi FALSE
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#> Attaching package: 'dplyr'
#> The following objects are masked from 'package:stats':
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#> filter, lag
#> The following objects are masked from 'package:base':
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#> intersect, setdiff, setequal, union
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#> ordinary text without R code
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#> label: standards_plot (with options)
#> List of 4
#> $ echo : logi FALSE
#> $ warning : logi FALSE
#> $ fig.height: num 3
#> $ out.width : chr "100%"
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#> Warning: cannot create dir '\\2021-12-03_pcr_lib_qc_report58a4167c4d05_files\figure-html', reason 'No such file or directory'
#> Warning: unable to open file '//2021-12-03_pcr_lib_qc_report58a4167c4d05_files/figure-html/standards_plot-1.png' for writing
#> Warning: opening device failed
#> Quitting from lines 21-22 (pcr-lib-qc.Rmd)
#> Error in png(..., res = dpi, units = "in"): unable to start png() device
#>