Download a Western blot by path

Downloads a Western blot image and returns its path. If it already exists in the specified location, no downloading will occur unless overwrite = TRUE. Will return the local path to the file.

Usage

wb_get(
  path,
  dest,
  overwrite = FALSE,
  user = Sys.getenv("WEBBER_USR"),
  wb_path = Sys.getenv("WEBBER_WBPATH"),
  quiet = FALSE
)

Arguments

path

Character. The path to the image/directory, sans wb_path.

dest

Character. The path to save the image/directory. If it doesn't have an extension, it's assumed you mean a folder, and that folder already exists.

overwrite

Logical. Should files be overwritten if they already exist?

user

Character. Whose folder this file should be pulled from.

wb_path

Character. Path to the top level directory that contains all western blots.

quiet

Logical. Should this function not message upon finding existing files?

Value

Character. The local path to the file or directory.

Details

This is a thin wrapper around bladdr::get_gbci_file, and has hard-coded paths - so it's more a quality-of-life function.

Examples

if (FALSE) {
wb_get(
  "2022-06-22/h3.tif",
  tempdir(),
  user = "aragaki-kai",
  wb_path = "Raw Data/licor"
)
}